Point d’étape OMERO / iRODS
11 octobre 2023
Objectives
- Bring microscopy data to the ☁️
- Together with bioimage analysis
- Switch to an Open Science culture 🌍
Constrains
Infra
- IaaS
- Pluggable at the facility
- Minimal local IT involvement
User
- Keep raw data access
- Opt in
- Ease collaborations
- Don’t repeat user inputs
- Ease analysis worflows
BioImage Town
madbot
- manage ISA architecture
- manage metadata and data links
iRODS
Services architecture
- Core services in the datacenter (Montpellier or Nantes)
- Facility buffer / regional storage
0. At training
- 📖 learn
- 👤 create
account
- 🔑 authenticate
1. Instrument ➡️
User space
- 🔬 acquire
- 🔑 mount network
share
- 🚌 transfer to
user layer
- 🔍 pre-analysis &
curation
- user download (user can get out here)
2. User space ➡️
Cooperative
- 🎫 plan data “metro
ride”
- 🔗 link to context
- 🚋 import into
coop
3. Cooperative ↔︎️ Cooperative
- 🔄
share
- 👁️ Visualise
- 🖊️ Annotate
- 📊 Analyse (in
place)
4. Cooperative ➡️ Commons
- Easy if we agree on metadata 😉
Roadmap